PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG479800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 241aa    MW: 25934.5 Da    PI: 6.9169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG479800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.7e-09158198954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++ +L++l+P       +K++ a++L +A++Y+k L
  Pavir.2NG479800.1.p 158 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 198
                          699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-15150220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-14153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6159198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-6171203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEFDLLNYSP EAQLELMNTM LQLEQLTKLD GGHESLMAPV SPPVSPVQTH AAHCFSPPPH  60
VSATAAATGY YPDQGTPPAA YAGSIGLEHL QVDYVLSPCA DTAARPAGSP SPTSSADAMR  120
EVIFHIAALQ PVEIEPEAVR PPKRRNVRIS KDPQSVAARL RRERISERIR TLQRLVPGGT  180
KMDTASMLDE AIHYVKFLKS QVQSLERAAA AATHRAAALG AAFHPALHAP WQYAVPHGDM  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RPPKRR
2158163RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9561561e-176EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957004.11e-118PREDICTED: transcription factor bHLH69-like
SwissprotQ9SND43e-41HEC2_ARATH; Transcription factor HEC2
TrEMBLK3ZWI41e-118K3ZWI4_SETIT; Uncharacterized protein
STRINGSi030966m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-41bHLH family protein